Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology

De novo assembly based variant calling pipeline for Illumina short reads

:hibiscus: reference-free transcriptome assembly for short and long reads

Simple bacterial assembly and annotation pipeline

A WGS de novo assembler based on the FMD-index for large genomes

Standalone C library for assembling Illumina short reads in small regions

Learning to untangle genome assembly with graph neural networks.

Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.

TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly

A simple DSL2 workflow: tutorial

No description provided.

A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq

Assembly of Nanopore Sequencing

No description provided.

Germline DNM caller based on LdBG assembly of pathogens

Iterative Organellar Genome Assembly

Calling SNPs using UNEAK (de novo) pipeline for ponderosa pine

De novo assembly pipeline for 10X linked-reads using Supernova

Biocore's de novo transcriptome assembly workflow based on Nextflow

String Graph Construction on Spark

De novo assembly of SARS-CoV-2 genome

NextFlow pipeline for Virus Variant calling and de novo Assembly of Nanopore and Illumina Reads

CloudEC is a MapReduce-based algorithm for correcting errors in next-generation sequencing big data.

[A.A. 23/24] R. Napoli

VirBench (Viral Assembly Benchmark) is a pipeline made to compare metagenomic assemblers with viral nanopore reads.

Bioinformatics Pipeline for dRADseq Data

De Bruijn graph-based genome assembler 🛠️

Identification of transposon insertion sites