Multi-Dimensional Retention Time Prediction for Linear and Crosslinked Peptides

MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of cleavable and non-cleavable crosslinkers from MS2 and MS3 spectra.

A python package to process protein cross-linking data.

Export MS Annika crosslink results to different formats.

Extensions for better usability of the cross-linking tool MaXLinker.

Calculates Intensities of Cross-linked Peptides from MS Annika CSMs.

Results, figures, and code for the manuscript of pyXLMS.

Generate a spectral library for Spectronaut from MS Annika results.

Helper scripts for crosslink analysis.

A comprehensive user guide for pyXLMS built with Nextra.

Short talk presentation, poster and abstract for APMRS-CEEPC 2024

MS Annika webpage built with nextra.

Repository containing scripts used for the analysis and visualization of the results of the MS Annika 3.0 non-cleavable crosslink search.

List of all available extensions for our cross-linking search engine MS Annika.

Short Talk Presentation for APMRS 2022

Link to the web application for pyXLMS.

Results and Evaluation of the MS3 Search Algorithm of MS Annika.

🌐 Build and browse the MS Annika webpage using Nextra for streamlined documentation and easy access to project resources.