COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.

A simplified python interface to COPASI.

Spatial bio-chemical reaction model editor and simulator

A Python toolbox for COPASI

The Copasi R connector, a high-level R API for Copasi

Kinetic modeling of glucose and acetate metabolisms in E. coli

Collection of OpenSource libraries to simplify COPASI build

code and models to analyze COVID-19 data for Connecticut and other states

A Python Toolbox for COPASI

MetEvolSim (Metabolome Evolution Simulator). A Python package to simulate the long-term evolution of metabolic levels.

PEtab --> COPASI importer

SpaceScanner: biological model optimization space scanner

📈 Examination of the impact of COVID-19 spread by using a custom epidemiological model.

A more general, higher level, C++ API which can also be leveraged by other programming languages.

COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

Reproduce the figures derived from the ODE model described in "Inflammatory Bowel Disease: How Effective Is TNF-α Suppression?" article, published in PLoS One, in 2016, and submit the resulting curated and annotated model to the BioModels database, adhering to their stringent standards.

COPASI Implementation of a 6-compartment SEIARD model for the simulation of the COVID-19 pandemic.

Python COPASI testing

A python package to integrate expression data into copasi models. It uses functionalities of python-copasi.

Emscripten COPASI Javascript Bindings

Stochastic model of the olfactory cilium transduction and adaptation (Antunes et al 2014)

A quantitative model based on biochemical kinetics, repesenting the tonic Calcium activity and Calcium signalling in C. elegans Oxygen-sensing neurons, encoded in COPASI..

Utility scripts written during HARMONY 2021

Vue3 Project using Pyodide / basico and python-copasi emscripten

Example Scripts for using COPASI simulations in pyABC

Dynamic Publication Media with the COPASI R Connector (CoRC)

Contains NAD biosynthesis model and python scripts to simulate the steady-state calculations.

Supplementary information/data for Pritchard & Birch (2014) doi:10.1111/mpp.12210

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