ellipse and convex hull fitting package for stable isotope data

population and community dynamics on spatial graphs, in julia.

Phylocom R interface

A spatially explicit trait- and individual-based microbial systems modelling framework

A collection of functions to summarize the Portal Data

A Data Standard for Ecological Trait Datasets

Hierarchical Model of Species Communities (HMSC) is an R package, which provides extensive set of analytical tools devised for numerical analysis of data on ecological communities or other similarly structured data. The methodological core of the HMSC approach is centered on combination of hierarchical regression and latent factor models.

Rossman S., Ostrom P.H., Gordon F., and Zipkin E.F. 2016. Beyond carbon and nitrogen: guidelines for estimating three‐dimensional isotopic niche space. Ecology and Evolution 6: 2405-2413.

This repository contains all the materials needed to reproduce Roth et. al (2017): Functional ecology and imperfect detection of species. Methods in Ecology and Evolution.

Cohortz & Kohortz - Collaboration Portal

hugo static site generator based site hosted on Netlify for Nederland Community Greenhouse project

Content for a Community Ecology course

🪲 Guide to ecological community analysis for SEER lab.

Joint modelling of abundance and genetic diversity. An integrated model of population genetics and community ecology.

Constellat.io

Code to make figures and certain analyses from "Source pool diversity and proximity shape the compositional uniqueness of insular mammal assemblages worldwide" (2021)

No description provided.

R workflow for analyzing bat acoustic monitoring (PAM) data

R functions for trait analysis of ecological communities

Repository for plotting rank-abundance curves using ggplot and perform taxonomic diversity analyses using true diversity estimates.

Leverage the vegan packages in R to determine ecological community patterns, and conduct a non-metric multidimensional scaling approach to uncover mite community dynamics.

Lithofacies and temporal variation predict composition of Siluro-Devonian vertebrate, invertebrate, and plant communities

This repository contains the research work from the "Techniques of Marine Research I" (TMR1) class taught by Margarita Brandt, about the community ecology of intertidal ecosystems in Ecuador mainland coast.

Code associated with the following manuscript, currently in review: M.S. Fischer, N.J. Patel, P.J. De Lorimier, M.F. Traxler "Prescribed fire selects for a pyrophilous soil subcommunity in a northern California mixed conifer forest"

This repository contains codes and data needed to reproduce the analyses and figures of the manuscript: García-Gómez, G., Sánchez-Hernandez, J., Más Gutiérrez, J.A., & Arranz, I. (2026). Community size structure of microbial plankton is associated with functional composition along a resource gradient in mountain lakes.

Data and code of the USFQ Terrestrial Zoology Lab's Pollination Ecology Project.

Data and code for Chang et al. 2025 - Microhabitat use by the Talladega Seal Salamander (Desmognathus cheaha) and spatial niche partitioning in metro-Atlanta headwater streams. Herpetological Conservation & Biology 20(2):213:228

Take advantage of the adehabitat packages in R to determine ecological community richness: including alpha, beta, and gamma diversity!

Data and code of Bauer et al. (submitted) as part of the GRASSWORKS project (Temperton et al. 2025)

Official Droidrush repository of NPDevs team (Avishkar-2019--Annual Techfest of MNNIT Allahabad)