circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data

Cancer circRNA identification pipeline with an ensemble approach

miARma-seq: a comprehensive tool for miRNA, mRNA and circRNA analysis

This pipeline automates the identification and visualization of circular RNAs (circRNAs) from RNA-seq data. It integrates multiple bioinformatics tools to process raw sequencing reads, remove adapters and contaminants, align to a reference genome, and detect circular transcripts from chimeric junctions.

Predict circRNA pipeline

Snakemake workflow to process circRNA AmpliconSeq datasets generated to study circRNAs in KSHV and human hosts using divergent primers.