LIANA: a LIgand-receptor ANalysis frAmework

A comprehensive computational pipeline that bridges single-cell genomics and cheminformatics to accelerate Alzheimer's Disease research. This project integrates advanced bioinformatics and machine learning to create a seamless workflow from raw single-cell RNA sequencing data to predictive drug discovery models.

Accelerate Alzheimer's Disease research with our AD-scRNA2QSAR pipeline. Transform scRNA-seq data into QSAR models seamlessly. 🌟🛠️

Generate Sankey plots from merged CellChat objects

This project analyzes how differences in the mathematical frameworks of CellChat and CellPhoneDB affect cell–cell communication inference from single-cell RNA-seq data in diet-induced liver disease.

Modular single-cell transcriptomics pipelines for Alzheimer’s disease, integrating R and Python workflows.

Retinal ganglion cells regeneration in 2 days post optic nerve crush retina | Lydia Tai | Dong Feng Chen Lab collaboration | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School

Customize your specific organism cellchatdb

This repository contains scripts for single-cell transcriptomic analysis using NCBI GEO data for the purpose of completing Masters in Biomedical Informatics Practicum project at MSBMI, UTHealth, Houston.

Socs3/Spp1 Project on Microglia in OIR | Ye Sun Lab Collaboration Project | Boston Children's Hospital

Growth Hormone effect on Cartilage Growth Plate; Light-Sheet Microscopy; Pseudocoloring | Projects I started and still working on in Andrei Chagin Lab | Karolinska Institutet

Single-cell RNA-seq analysis of CD8 T cell functional states in lung cancer - two-dataset portfolio examining tumor-associated exhaustion in LUAD and its association with anti-PD-1 immunotherapy response in NSCLC.