23 results for “topic:cell-free-dna”
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
Copy number calling and variant classification using targeted short read sequencing
cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data
R package to work with ctDNA sequencing data
cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis
FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.
Bayesian-based fetal genotyping using maternal cell-free DNA and parental sequencing data.
LIONHEART detects cancer from whole genome sequenced plasma cell-free DNA.
Bisulphite-sequencing DNA methylation pipeline
As a tool for cancer subtype prediction, Keraon uses features derived from cell-free DNA (cfDNA) in conjunction with PDX reference models to perform both classification and heterogenous phenotype fraction estimation.
An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq
cell-free ChIP-seq pipeline
No description provided.
Landing page for my github!
Cell-free DNA fragmentation analysis directly from electrophoresis data
Extract read counts from cfDNA
Hunting for CMV and HHV-6 in cfDNA sequence
As a cell-free DNA (cfDNA) processing pipeline, Triton conducts fragmentomic and phased-nucleosome coverage analyses on individual or composite genomic regions and outputs both region-level biomarkers and nt-resolution signal profiles.
CEliver model
This directory contains scripts for "Cell-free DNA Whole Genome Sequencing for Non-Invasive MRD Detection in Multiple Myeloma" by Abelman et al., 2025
A pipeline analyzing fragmentomics profile of cfDNA sequencing data
A code to simulate the events of cell-free protein expression
Structural Variants in cell-free tumor DNA