A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.

Pipeline for BS-Seq data based on snakemake

Uses `snakemake` to run `bismark` in a reproducible pipeline. Can be run locally, or on a cluster running the SLURM scheduler.

Produces coverage and methylation percentage data from FASTQ files.

A basic simple workflow for bisulfite sequencing data methylation analysis using bismark.

Process SRA bisulfite sequencing data easily with Bismark-MethylDackel pipeline.

Using Snakemake to implement ENCODE WGBS pipeline