Detailed bioinformatics scripts and methods used in the NAM genome paper.

Code for design of diagnostic PCR primers, and metabarcoding markers.

Natural Language Search and Analysis of High Dimensional Genomic Data

High-throughput gene to knowledge mapping through massive integration of public sequencing data.

生物信息学python代码，专注于重测序文本计算、处理

Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México

Explore biomolecular pathways in Reactome from the command-line or a Python script

programs and scripts, mainly python, for analyses related to nucleic or protein sequences

Scripts and procedures for detecting positively selected genes and codons in primates

A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common methods.

A mosaic genome painting tool for plant genomes

A Python script to map PDB ID + chain ID to UniProt ID.

This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the pathogen. The scientific community and governments of other countries are looking for actions along these lines. The United Kingdom recently established a research network for genomic studies of SARS-CoV-2Covid-19 with a contribution of GBP 20 million (https://www.gov.uk/government/news/uk-launches-whole- genome-sequence-alliance-to-map-spread-of-coronavirus).

A complete, reproducible bulk RNA-seq pipeline from raw FASTQ files to differential gene expression — built on a real published dataset, with every command tested and verified on macOS.

A set of processes/pipelines for bioinformatics

Various bioinformatics scripts

Split multi fasta file into single fasta files

A collection of useful bioinformatics scripts.

Using data from PDBePISA with the convenience of Python and Jupyter.

Filter for reads from taxa of interest using Kraken2/Centrifuge classification results.

a sequence analysis workflow for low-input nanopore sequencing

Scripts for executing a filtering, clustering and identification pipeline for eDNA samples.

Find motifs enriched around prominent crosslinks

Comparison of sequencing read mapping to pangenome graphs

Простые биоинформатические скрипты на Python 3. Удобная и гибкая замена Excel/Calc для решения повседневных рутинных задач вычислительной биологии.

Repo for running command line-based BLAST in Jupyter environment provided via Binder.

Toolbox for Studying Bacteria, Archaea, and Complex Taxons

bioinformatic utility libraries in python

A shell script that uses diamond to compute the reciprocal best hits between two proteomes in a rush.

Ribo-seq focused Oligo Design pipeline for experiment-specific Depletion of Ribosomal RNAs