Robust, flexible and resource-efficient pipelines using Go and the commandline

A language and runtime for distributed, incremental data processing in the cloud

Community-driven, simple, yet powerful framework for fast, cost-effective distributed Compute over Data.

Rapid large-scale prokaryote pan genome analysis

Package for fetching metadata and downloading data from SRA/ENA/GEO

Analysis Pipeline for Single Cell ATAC-seq

GCP for Bioinformatics Researchers

Finds SNP sites from a multi-FASTA alignment file

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

A tool to circularize genome assemblies

Whole Genome Sequencing analysis, WGS analysis

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.

Antimicrobial Resistance Identification By Assembly

Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

ATAC-seq and DNase-seq processing pipeline

NGLess: NGS with less work

A modular annotation tool for genomic variants

WGBS/NOMe-seq Data Processing & Differential Methylation Analysis

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis by using GATK and Sentieon. 一个基于 GATK 和 Sentieon 的简易且全面的 WGS/WES 分析流程生成器.

Analyze your RNA sequencing data without writing a single line of code

A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

Cluster single cells and analyze cell clade relationships with colorful visualizations.

AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.

An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study

A bioinformatics pipeline to analyze mtDNA from NGS data

Compacted and colored de Bruijn graph construction and querying

Infectious Disease Sequencing Platform

A collection of reusable WDL tasks. Category:Other