41 results for “topic:bioimaging”
Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
Discover, install, and share napari plugins
Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
Python libraries for loading, running and packaging bioimage.io models
R package for visualization of highly multiplexed imaging data
BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster
An introduction to OME-Zarr for big bioimaging data
Python 3 x-ray simulator
A web-based resource for the scientific visualization community to enhance reproducibility and facilitate testing and development of OME-Zarr tools.
Package providing bioimaging functionality using TileDB. Source of the tiledb-bioimg Python package.
DeepCOVIDExplainer: Explainable COVID-19 Diagnosis from Chest X-ray Images
TileDB BioImaging plugin for Napari
Visualisation software for imaging mass cytometry data
ZAugNet
3D volume rendering software for fluorescence microscopy
Scripts for use with BIOMERO
A Python3 Radial Image Analysis Toolkit
Zarr Homepage
Predicting successful CME events using only clathrin markers. 🦠📈
Scientific AI and the Future of OME-Zarr: Building Intelligent Bioimage Analysis Workflows
Zarr Official Blog
Rust library for reading imaging mass cytometry (IMC) data stored in .mcd files.
MOMSI Standard Landscape Review Curation Workflow & Multi-Omics Dashboard
FLOPA is a python based tool for FLIM data opening, processing and analysis. Planned as Napari plugin/widget.
Paper on how to supress background while imaging gold nanorods through the use of the anti-Stokes emission.
Interactive interface to visualize spectra and filter sets for any microscope. Easily customizable.
Repository for subproject P4 "Endpoint Drafting and Testing", part of project "Increasing interoperability of bioimage dataset resources"at the 2024 deNBI BioHackathon
Clone of https://git.embl.de/balazs/B3D