Lightweight and Fast; RNA-seq quantification at the event-level

AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.

rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis

Discover differential transcript usage from polyA-captured single cell RNA-seq data

BRIE: Bayesian Regression for Isoform Estimate in Single Cells

Interactive R package to quantify, analyse and visualise alternative splicing

Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)

NGS Tutorial

A network-based approach for exon set enrichment

No description provided.

ISOform-guided prediction of epiTOPEs in cancer

📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.

Vials is a Caleydo Web application for visualizing alternative splicing based on mRNAseq data.

An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictographic" (eFP) based on its RPKM expression level.

Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data

Use Thor's Axe to cut exons into their evolutionary building blocks :zap:

⚔️ Find splicing-led, functional changes of the proteome.

Baltica: integrated differential junction usage

Alternative Splicing ToolKit

Scripts associated to transcriptome-wide analysis of the effects of systematic knock down of splicing factors and regulators using siRNAs in HeLa cells

AltAnalyze version 3 is a Python3 library to integrate and compare diverse RNA isoform datasets.

Tutorials for using BRIE

No description provided.

Reproducibility of "Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues."

Functional impact of cancer-specific isoform switching events: Visualization via STRING interaction network

A snakemake workflow to perform Alternative Splicing analysis from RNA-Seq with SUPPA2.

A tool to model the evolution and structural impact of alternative splicing

IsoAligner: dynamic mapping of amino acid positions across protein isoforms

A supervised methodology for analyzing dysregulation in splicing machinery: an application in cancer diagnosis.

Docker to run rMATS for splicing quantification and analysis