47 results for “topic:alignment-free”
Find and visualize rearrangements in DNA sequences
♥ Efficient Estimation of Evolutionary Distances
Fast and accurate tool for estimating genomic distances between genome-skims
A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
♥ Fast and Accurate Estimation of Evolutionary Distances
Alignment-Free RGBT Salient Object Detection: Semantics-guided Asymmetric Correlation Network and A Unified Benchmark
A tool to infer metagenomic sample composition
Mapping-free software for fishing relevant reads in an RNA-Seq sample
Deep learning based alignment-free method for protein family modeling and prediction
MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences
AlfaPang builds pangenome graphs without alignments or references.
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Alignment-Free RGB-T Salient Object Detection: A Large-scale Dataset and Progressive Correlation Network
Alignment-free simulation, computation, and visualization of Low-compexity regions in biological data
Extract SNPs and accessory differences in closely related bacterial genomes from k-mers
AltaiR: a C toolkit for alignment-free and temporal analysis of multi-FASTA data
Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences
genotyping by Mapping-free ALternate-allele detection of known VAriants
A tool for compression and analysis of DNA sequences
Alignment-free phylogenomic splits
A neural network for alignment-free, kingdom-level classification of eDNA
An ensemble method for predicting transcription factor in protein sequences
A memory efficient tool to map and visualize evolutionary regions
Generalized k-mer return time distribution (RTD) calculation library
Supplementary data for "A survey and evaluations of histogram-based statistics in alignment-free sequence comparison"
Phylogeny reconstruction based on spaced word matches
subset and spaced seed design tool
Alignment-free bacterial identification and classification in metagenomics sequencing data using machine learning
:chart_with_downwards_trend: Disk Storage of Compressed k-mer Dictionaries, with or without Random Access in Main Memory.
web application for DNA comparison, alignment and phylogenetic tree. Released on 2020.