An API to extract informations from text using OntoGPT.

🧑‍💻 Development setup

To run the API locally for development.

📥️ Clone

Clone the repository:

git clone https://github.com/vemonet/ontogpt-api
cd ontogpt-api

🐣 Install dependencies

Install Hatch, this will automatically handle virtual environments and make sure all dependencies are installed when you run a script in the project:

pip install --upgrade hatch

Install the dependencies in a local virtual environment:

hatch -v env create

Create a .env file with your BioPortal and OpenAI API keys required to run OntoGPT:

BIOPORTAL_APIKEY=XXX
OPENAI_APIKEY=XXX

🚀 Run the API

On http://localhost:8000

hatch run dev

🧹 Code formatting

The code will be automatically formatted when you commit your changes using pre-commit. But you can also run the script to format the code yourself:

hatch run fmt

Check the code for errors, and if it is in accordance with the PEP8 style guide, by running flake8 and mypy:

hatch run check

♻️ Reset the environment

In case you are facing issues with dependencies not updating properly you can easily reset the virtual environment with:

hatch env prune

🐳 Deploy in production with docker

Create a .env file with your BioPortal and OpenAI API keys:

BIOPORTAL_APIKEY=XXX
OPENAI_APIKEY=XXX

Deploy with docker-compose:

docker-compose up

Access on http://localhost:8000