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rsutormin/feature_values

feature values

Feature Values Service

Overview

This KBase service provides a set of methods for manipulation and visualization
of expression values organized as two-dimentional matrix and assigned to
genome features on one dimention and to different sorts conditions on second
dimention.

Authors

Roman Sutormin, LBL (rsutormin@lbl.gov)
Marcin Joachimiak, LBL (mjoachimiak@lbl.gov)
Pavel Novichkov, LBL (psnovichkov@lbl.gov)
Srividya Ramakrishnan, CSHL (srividya.ramki@gmail.com)
Michael Sneddon, LBL (mwsneddon@lbl.gov)

Special deployment instructions

  • There is a dependency to R-script command in both service and AWE-worker scripts
  • Pyhton Scikit-learn package is not utilized yet but it's in short-term plans
  • Follow the standard KBase deployment and testing procedures (you have to specify
    test user credentials in test/test.cfg file in order to be able to run "make test")

Starting/Stopping the service, and other notes

  • to start and stop the service, use the 'start_service' and 'stop_service'
    scripts in (the default location) /kb/deployment/services/KBaseFeatureValues

Languages

Java91.2%Python6.2%R1.5%Makefile1.1%HTML0.0%

Contributors

MIT License
Created June 15, 2016
Updated July 23, 2020
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