RecobundlesX pipeline

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Run the RecobundlesX pipeline.

If you use this pipeline, please cite:

Garyfallidis, Eleftherios, et al. Recognition of white matter bundles using
local and global streamline-based registration and clustering.
NeuroImage 170 (2018) https://doi.org/10.1016/j.neuroimage.2017.07.015

Kurtzer GM, Sochat V, Bauer MW Singularity: Scientific containers for
mobility of compute. PLoS ONE 12(5): e0177459 (2017)
https://doi.org/10.1371/journal.pone.0177459

P. Di Tommaso, et al. Nextflow enables reproducible computational workflows.
Nature Biotechnology 35, 316–319 (2017) https://doi.org/10.1038/nbt.3820

Requirements

• Nextflow
• scilpy
• ants

Usage

See USAGE or run nextflow run main.nf --help