AGI-Bio

Genomic and proteomic research using the OpenCog toolset.
This includes experiments in applying MOSES, PLN, pattern mining
and other OpenCog components.

The MOZI.AI repositories make
use of this package, and extend the current development of OpenCog-based
bioinformatics tools as SingularityNET
sevices.

Building and Installing

To build the AGI-Bio code, you will need to build and install the
OpenCog AtomSpace first.
All of the pre-requistes listed there are sufficient to also build
this project. Building is as "usual":

    cd to project root dir
    mkdir build
    cd build
    cmake ..
    make -j
    sudo make install
    make -j test

Overview

The directory layout is as follows:

• bioscience - Provides the GeneNode and
  MoleculeNode Atom types.

• knowledge-import -- scripts for importing
  external knowledge bases into the AtomSpace.

• moses-scripts -- scripts for importing MOSES
  models; such models distinguish binary phenotype categories based
  on gene expression data.