Phylogenetic compression - supplementary files

Supplementary files for the paper

• K. Břinda, L. Lima, S. Pignotti, N. Quinones-Olvera, K. Salikhov, R. Chikhi, G. Kucherov, Z. Iqbal, and M. Baym, Efficient and robust search of microbial genomes via Phylogenetic Compression, bioRxiv 2023.04.15.536996, 2023. https://doi.org/10.1101/2023.04.15.536996

Table of Contents

• BIGSIdata
• GISP
• NCTC3k
• SC2

BIGSIdata

decompress-bigsi-data

Program to decompress phylogenetically compressed de Bruijn graphs from Fig 2.

GISP

• Results of the ngono scaling experiment

NCTC3k

• Results of the NCTC3k scaling experiment

SC2

• Results of the SC2 scaling experiment