SNP-Clustering

Perl script to cluster SNPs based on their genotype.

Usage

perl ./SNPC.pl [options]

Options:
	--file		=>	Input data file.
	--outputdir	=>	Output directory.		[./]
	--percent	=> 	Similarity percentage cut	[97]
	--nind		=>	Number of individuals		[100]

Description

Perl software to cluster SNPs based on its genotype.
Genotypes should be written in (a,h,b), (a,c) and (b,d) format, "-" for No Call or as 0,1,2 genotype calls and -1 for No Call.

Author

Jose M. Hidalgo-Lopez - chema.hl@gmail.com