kmer-counter-unordmap

The kfs program reads in multiline FASTA records, counts canonical kmers using the STL unordered_map, and measures time taken to read in and process records.

Usage

Compilation

$ make kfs

Performance

Specify variables K (integer) and FASTA (path to FASTA sequences).

$ /usr/bin/time -l ./kfs -k ${K} -i ${FASTA}
...