AFSC RACE GAP Bering Sea Survey Data Report

This code is always in development. Find code used for various reports
in the code
releases.

This repository was previously named AFSCDataReport and
GAP_BS_DataReport.

The scripts therein reproducibly produce our annual data reports,
presentations, and other outreach documents from data to data product.

This code is primarily maintained by:

Emily Markowitz (Emily.Markowitz AT noaa.gov;
@EmilyMarkowitz-NOAA)

Liz Dawson (Liz.Dawson AT noaa.gov;
@liz-dawson-NOAA)

Chris Anderson (Christopher.Anderson AT noaa.gov;
@ChrisAnderson-NOAA)

Alaska Fisheries Science Center,

National Marine Fisheries Service,

National Oceanic and Atmospheric Administration,

Seattle, WA 98195

This code and the associated releases were used to develop the following reports, outreach documents, and presentations:

Annual Bering Sea Data Report and presentations [Markowitz et al.
(2023); Markowitz, Dawson, Charriere, Prohaska,
Rohan, Stevenson, et al. (2022b); Markowitz,
Dawson, Charriere, Prohaska, Rohan, Stevenson, et al.
(2022a); Markowitz, Dawson, Charriere, Prohaska,
Rohan, Haehn, et al. (2022);
2021NEBS2022PlanTeamPres; 2022NEBS2022PlanTeamPres]

Northern Bering Sea Groundfish and Crab Trawl Survey Highlights
(Britt et al., 2021; Markowitz, Dawson,
Anderson, et al., 2022)

This document is for informational purposes only and does not
necessarily represent the views or official position of the Department
of Commerce, the National Oceanic and Atmospheric Administration, or
the National Marine Fisheries Service. Not to be cited without
permission from the authors.

• 11/4/2021 Presentation at the University of Alaska Fairbanks Strait
  Science Seminar
• 11/4/2022 Presentation at the University of Alaska Fairbanks Strait
  Science Seminar

Suggestions and Comments

If you see that the data, product, or metadata can be improved, you are
invited to create a pull
request,
submit an issue to the GitHub
organization,
or submit an issue to the code’s
repository.

R Version Metadata

sessionInfo()

## R version 4.4.1 (2024-06-14 ucrt)
## Platform: x86_64-w64-mingw32/x64
## Running under: Windows 10 x64 (build 19045)
## 
## Matrix products: default
## 
## 
## locale:
## [1] LC_COLLATE=English_United States.utf8  LC_CTYPE=English_United States.utf8   
## [3] LC_MONETARY=English_United States.utf8 LC_NUMERIC=C                          
## [5] LC_TIME=English_United States.utf8    
## 
## time zone: America/Los_Angeles
## tzcode source: internal
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
##  [1] RODBC_1.3-23      XML_3.99-0.17     flextable_0.9.6   httr_1.4.7        pingr_2.0.3       scales_1.3.0     
##  [7] raster_3.6-26     sp_2.1-4          ps_1.7.7          digest_0.6.37     ggspatial_1.1.9   shadowtext_0.1.4 
## [13] rlist_0.4.6.2     coldpool_3.3-1    reshape2_1.4.4    lubridate_1.9.3   fields_16.2       spam_2.10-0      
## [19] ggthemes_5.1.0    akgfmaps_3.5.3    terra_1.7-78      stars_0.6-6       abind_1.4-5       sf_1.0-16        
## [25] gstat_2.1-1       classInt_0.4-10   readtext_0.91     stringr_1.5.1     janitor_2.2.0     viridis_0.6.5    
## [31] viridisLite_0.4.2 here_1.0.1        readxl_1.4.3      tidyr_1.3.1       readr_2.1.5       magrittr_2.0.3   
## [37] googledrive_2.1.1 dplyr_1.1.4       plyr_1.8.9        ggridges_0.5.6    ggpubr_0.6.0      extrafont_0.19   
## [43] magick_2.8.4      png_0.1-8         cowplot_1.1.3     ggplot2_3.5.1     officedown_0.3.3  officer_0.6.6    
## [49] rmarkdown_2.28    knitr_1.48       
## 
## loaded via a namespace (and not attached):
##  [1] rstudioapi_0.16.0       jsonlite_1.8.8          farver_2.1.2            fs_1.6.4               
##  [5] ragg_1.3.2              vctrs_0.6.5             memoise_2.0.1           askpass_1.2.0          
##  [9] rstatix_0.7.2           htmltools_0.5.8.1       curl_5.2.2              broom_1.0.6            
## [13] cellranger_1.1.0        KernSmooth_2.23-24      zoo_1.8-12              cachem_1.1.0           
## [17] uuid_1.2-1              lifecycle_1.0.4         pkgconfig_2.0.3         R6_2.5.1               
## [21] fastmap_1.2.0           snakecase_0.11.1        colorspace_2.1-1        rprojroot_2.0.4        
## [25] textshaping_0.4.0       labeling_0.4.3          fansi_1.0.6             timechange_0.3.0       
## [29] compiler_4.4.1          gargle_1.5.2            proxy_0.4-27            intervals_0.15.5       
## [33] bit64_4.0.5             fontquiver_0.2.1        withr_3.0.1             backports_1.5.0        
## [37] carData_3.0-5           DBI_1.2.3               Rttf2pt1_1.3.12         maps_3.4.2             
## [41] ggsignif_0.6.4          openssl_2.2.1           rappdirs_0.3.3          tools_4.4.1            
## [45] units_0.8-5             zip_2.3.1               extrafontdb_1.0         glue_1.7.0             
## [49] grid_4.4.1              generics_0.1.3          gtable_0.3.5            tzdb_0.4.0             
## [53] class_7.3-22            data.table_1.16.0       hms_1.1.3               xml2_1.3.6             
## [57] car_3.1-2               utf8_1.2.4              pillar_1.9.0            vroom_1.6.5            
## [61] lattice_0.22-6          bit_4.0.5               FNN_1.1.4               tidyselect_1.2.1       
## [65] rvg_0.3.4               fontLiberation_0.1.0    fontBitstreamVera_0.1.1 gridExtra_2.3          
## [69] V8_5.0.0                xfun_0.47               stringi_1.8.4           geojsonsf_2.0.3        
## [73] rmapshaper_0.5.0        yaml_2.3.10             evaluate_0.24.0         codetools_0.2-20       
## [77] gdtools_0.4.0           tibble_3.2.1            cli_3.6.3               systemfonts_1.1.0      
## [81] processx_3.8.4          munsell_0.5.1           spacetime_1.3-1         Rcpp_1.0.13            
## [85] parallel_4.4.1          dotCall64_1.1-1         xts_0.14.0              e1071_1.7-14           
## [89] crayon_1.5.3            purrr_1.0.2             rlang_1.1.4

NOAA README

This repository is a scientific product and is not official
communication of the National Oceanic and Atmospheric Administration, or
the United States Department of Commerce. All NOAA GitHub project code
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The Department of Commerce seal and logo, or the seal and logo of a DOC
bureau, shall not be used in any manner to imply endorsement of any
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NOAA License

Software code created by U.S. Government employees is not subject to
copyright in the United States (17 U.S.C. §105). The United
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copyright protection in countries other than the United States for
Software authored in its entirety by the Department of Commerce. To this
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Oceanographic and Atmospheric Administration |
NOAA Fisheries