ggtree: an R package for visualization of phylogenetic trees with their annotation data

‘ggtree’ extends the ‘ggplot2’ plotting system which implemented the
grammar of graphics. ‘ggtree’ is designed for visualization and
annotation of phylogenetic trees and other tree-like structures with
their annotation data.

See also
https://yulab-smu.top/contribution-tree-data/

✍️ Authors

Guangchuang YU

School of Basic Medical Sciences, Southern Medical University

https://yulab-smu.top

If you use ggtree in
published research, please cite the most appropriate paper(s) from this
list:

1. S Xu, L Li, X Luo, M Chen, W Tang, L Zhan, Z Dai, TT. Lam, Y Guan,
   G Yu. Ggtree: A serialized data object for visualization of a
   phylogenetic tree and annotation data. iMeta, 2022, 1(4):e56.
   doi: 10.1002/imt2.56
2. G Yu. Data Integration, Manipulation and Visualization of
   Phylogenetic Treess (1st edition). Chapman and Hall/CRC, 2022.
   doi: 10.1201/9781003279242
3. G Yu. Using ggtree to visualize data on tree-like structures.
   Current Protocols in Bioinformatics, 2020, 69:e96. doi:
   10.1002/cpbi.96
   • Source code and data to reproduce figures in the
     article
4. G Yu^*, TTY Lam, H Zhu, Y Guan^*. Two
   methods for mapping and visualizing associated data on phylogeny
   using ggtree. Molecular Biology and Evolution, 2018,
   35(2):3041-3043. doi:
   10.1093/molbev/msy194
   • Source code to produce Supplementary
     Material
5. G Yu, DK Smith, H Zhu, Y Guan, TTY Lam^*. ggtree: an
   R package for visualization and annotation of phylogenetic trees
   with their covariates and other associated data. Methods in
   Ecology and Evolution. 2017, 8(1):28-36. doi:
   10.1111/2041-210X.12628

💖 Contributing

We welcome any contributions! By participating in this project you agree
to abide by the terms outlined in the Contributor Code of
Conduct.