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Flavjack/GerminaR

Packages for graphics and index for seed germination ecophysiological evaluation

GerminaR

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GerminaR is a platform base in open source R package to calculate and
graphic the main germination indices. GerminaR include a web application
called “GerminQuant for R” for interactive analysis.

Installation

You can install the released version of GerminaR from
CRAN with:

install.packages("GerminaR")

And the development version from
GitHub with:

if (!require("remotes"))
  install.packages("remotes")
remotes::install_github("Flavjack/GerminaR")

GerminaQuant app

GerminaR::GerminaQuant()

If is the first time running the app you should install the app
dependencies, including the following argument:

GerminaR::GerminaQuant(dependencies = TRUE)

After install the package and the app dependencies you can access to the
app through the Addins list in Rstudio, or in the following link in the
internet https://flavjack.shinyapps.io/germinaquant/

Citation

Lozano-Isla, Flavio; Benites-Alfaro, Omar Eduardo; Pompelli, Marcelo
Francisco (2019). GerminaR: An R package for germination analysis with
the interactive web application “GerminaQuant for R.” Ecological
Research, 34(2), 339–346. https://doi.org/10.1111/1440-1703.1275

Languages

R89.5%TeX10.1%HTML0.3%CSS0.1%

Contributors

Other
Created January 12, 2016
Updated October 29, 2025
Flavjack/GerminaR | GitHunt