Towards epigenetic signature of RY and Telobox related cis-motifs

Welcome,

here you can find the more detailed description on the code I used for my master's thesis.

Workflow:

1. Data Download & Blacklists

These two scripts can be run in parallel:

2. Cis-motif Annotation OR
3. Chromatin data preparation

This script can be used after the first three scripts have run.

3. Motif distribution in H3K27me3+ and H3K27me3- genes

Next comes the GAT Analysis with 6 run in R.

4. GAT-Annotation
5. GAT-Analysis
6. GAT-Visualization

In the end comes the GO-Analysis with 8 and 9 run in R.

7. GO-Preparation
8. TopGO-Analysis
9. GO visualization